Streptomyces populi sp. nov., a novel endophytic actinobacterium isolated from stem of Populus adenopoda Maxim.
Identifieur interne : 000C72 ( Main/Exploration ); précédent : 000C71; suivant : 000C73Streptomyces populi sp. nov., a novel endophytic actinobacterium isolated from stem of Populus adenopoda Maxim.
Auteurs : Zhikuan Wang [République populaire de Chine] ; Binjin Jiang [République populaire de Chine] ; Xiaoguang Li [République populaire de Chine] ; Longzhan Gan [République populaire de Chine] ; Xiufeng Long [République populaire de Chine] ; Yuqin Zhang [République populaire de Chine] ; Yongqiang Tian [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2018.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acide diamino-pimélique (composition chimique), Acides gras (composition chimique), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Composition en bases nucléiques (MeSH), Hybridation d'acides nucléiques (MeSH), Phospholipides (composition chimique), Phylogenèse (MeSH), Populus (microbiologie), Streptomyces (classification), Streptomyces (croissance et développement), Streptomyces (isolement et purification), Techniques de typage bactérien (MeSH), Tiges de plante (microbiologie), Vitamine K2 (analogues et dérivés), Vitamine K2 (composition chimique).
- MESH :
- analogues et dérivés : Vitamine K2.
- composition chimique : Acide diamino-pimélique, Acides gras, Phospholipides, Streptomyces, Vitamine K2.
- croissance et développement : Streptomyces.
- génétique : ADN bactérien, ARN ribosomique 16S.
- isolement et purification : Streptomyces.
- microbiologie : Populus, Tiges de plante.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Hybridation d'acides nucléiques, Phylogenèse, Techniques de typage bactérien.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Diaminopimelic Acid (chemistry), Fatty Acids (chemistry), Nucleic Acid Hybridization (MeSH), Phospholipids (chemistry), Phylogeny (MeSH), Plant Stems (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Streptomyces (classification), Streptomyces (growth & development), Streptomyces (isolation & purification), Vitamin K 2 (analogs & derivatives), Vitamin K 2 (chemistry).
- MESH :
- chemical , analogs & derivatives : Vitamin K 2.
- chemical , chemistry : Diaminopimelic Acid, Fatty Acids, Phospholipids, Vitamin K 2.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- classification : Streptomyces.
- growth & development : Streptomyces.
- isolation & purification : Streptomyces.
- microbiology : Plant Stems, Populus.
- Bacterial Typing Techniques, Base Composition, China, Nucleic Acid Hybridization, Phylogeny, Sequence Analysis, DNA.
Abstract
A novel endophytic actinobacterium strain, designated A249T, was isolated from the stem of Populus adenopoda collected at Mount Qingcheng in south-west China. Its taxonomic position was determined by using a polyphasic approach. The cultural and morphological characteristics of isolate A249T were consistent with members of the genus Streptomyces. Growth occurred at 10-37 °C, pH 6.0-12.0 and in the presence of 0-4 % (w/v) NaCl. Analysis of the 16S rRNA gene sequence and phylogenetic trees showed the closest phylogenetic relatives to strain A249T were Streptomyces shaanxiensis JCM 16925T (98.0 % 16S rRNA gene sequence similarity) and Streptomyces lanatus JCM 4332T (97.9 %). The DNA-DNA hybridization values between the strain A249T and the two reference strains ranged from 41.4 to 49.4 %. The DNA G+C content was 71.7 mol%. The range of average nucleotide identity values was 81.5-86.7 %. Chemical analysis of cellular components indicated that strain A249T contained ll-diaminopimelic acid, xylose and galactose. The predominant menaquinones were MK-9(H6) and MK-9(H8). The polar lipids were diphosphatidylglycerol, phosphatidylinositol mannosides, phosphatidylethanolamine, two unidentified lipids, one unidentified phospholipid, one unidentified aminolipid and one unidentified aminophospholipid. The major fatty acids comprised C16 : 0, iso-C14 : 0, iso-C15 : 0, iso-C16 : 0, anteiso-C15 : 0 and C16 : 1ω7c. On the basis of the phenotypic and genotypic differentiation of the three tested strains, isolate A249T is proposed to represent a novel species of the genus Streptomyces, named Streptomyces populi sp. nov. The type strain is A249T (=CGMCC 4.7417T=JCM 32175T).
DOI: 10.1099/ijsem.0.002877
PubMed: 29944112
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<term>Base Composition (MeSH)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Diaminopimelic Acid (chemistry)</term>
<term>Fatty Acids (chemistry)</term>
<term>Nucleic Acid Hybridization (MeSH)</term>
<term>Phospholipids (chemistry)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Stems (microbiology)</term>
<term>Populus (microbiology)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Streptomyces (classification)</term>
<term>Streptomyces (growth & development)</term>
<term>Streptomyces (isolation & purification)</term>
<term>Vitamin K 2 (analogs & derivatives)</term>
<term>Vitamin K 2 (chemistry)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term>
<term>ARN ribosomique 16S (génétique)</term>
<term>Acide diamino-pimélique (composition chimique)</term>
<term>Acides gras (composition chimique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Phospholipides (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Streptomyces (classification)</term>
<term>Streptomyces (croissance et développement)</term>
<term>Streptomyces (isolement et purification)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Tiges de plante (microbiologie)</term>
<term>Vitamine K2 (analogues et dérivés)</term>
<term>Vitamine K2 (composition chimique)</term>
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<keywords scheme="MESH" type="chemical" qualifier="analogs & derivatives" xml:lang="en"><term>Vitamin K 2</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Diaminopimelic Acid</term>
<term>Fatty Acids</term>
<term>Phospholipids</term>
<term>Vitamin K 2</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term>
<term>RNA, Ribosomal, 16S</term>
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<term>Acides gras</term>
<term>Phospholipides</term>
<term>Streptomyces</term>
<term>Vitamine K2</term>
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<term>ARN ribosomique 16S</term>
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</keywords>
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</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Populus</term>
<term>Tiges de plante</term>
</keywords>
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<term>Chine</term>
<term>Composition en bases nucléiques</term>
<term>Hybridation d'acides nucléiques</term>
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<term>Techniques de typage bactérien</term>
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<front><div type="abstract" xml:lang="en">A novel endophytic actinobacterium strain, designated A249<sup>T</sup>
, was isolated from the stem of Populus adenopoda collected at Mount Qingcheng in south-west China. Its taxonomic position was determined by using a polyphasic approach. The cultural and morphological characteristics of isolate A249<sup>T</sup>
were consistent with members of the genus Streptomyces. Growth occurred at 10-37 °C, pH 6.0-12.0 and in the presence of 0-4 % (w/v) NaCl. Analysis of the 16S rRNA gene sequence and phylogenetic trees showed the closest phylogenetic relatives to strain A249<sup>T</sup>
were Streptomyces shaanxiensis JCM 16925<sup>T</sup>
(98.0 % 16S rRNA gene sequence similarity) and Streptomyces lanatus JCM 4332<sup>T</sup>
(97.9 %). The DNA-DNA hybridization values between the strain A249<sup>T</sup>
and the two reference strains ranged from 41.4 to 49.4 %. The DNA G+C content was 71.7 mol%. The range of average nucleotide identity values was 81.5-86.7 %. Chemical analysis of cellular components indicated that strain A249<sup>T</sup>
contained ll-diaminopimelic acid, xylose and galactose. The predominant menaquinones were MK-9(H6) and MK-9(H8). The polar lipids were diphosphatidylglycerol, phosphatidylinositol mannosides, phosphatidylethanolamine, two unidentified lipids, one unidentified phospholipid, one unidentified aminolipid and one unidentified aminophospholipid. The major fatty acids comprised C16 : 0, iso-C14 : 0, iso-C15 : 0, iso-C16 : 0, anteiso-C15 : 0 and C16 : 1ω7c. On the basis of the phenotypic and genotypic differentiation of the three tested strains, isolate A249<sup>T</sup>
is proposed to represent a novel species of the genus Streptomyces, named Streptomyces populi sp. nov. The type strain is A249<sup>T</sup>
(=CGMCC 4.7417<sup>T</sup>
=JCM 32175<sup>T</sup>
).</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">29944112</PMID>
<DateCompleted><Year>2018</Year>
<Month>08</Month>
<Day>08</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>12</Month>
<Day>02</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>68</Volume>
<Issue>8</Issue>
<PubDate><Year>2018</Year>
<Month>Aug</Month>
</PubDate>
</JournalIssue>
<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Streptomyces populi sp. nov., a novel endophytic actinobacterium isolated from stem of Populus adenopoda Maxim.</ArticleTitle>
<Pagination><MedlinePgn>2568-2573</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.002877</ELocationID>
<Abstract><AbstractText>A novel endophytic actinobacterium strain, designated A249<sup>T</sup>
, was isolated from the stem of Populus adenopoda collected at Mount Qingcheng in south-west China. Its taxonomic position was determined by using a polyphasic approach. The cultural and morphological characteristics of isolate A249<sup>T</sup>
were consistent with members of the genus Streptomyces. Growth occurred at 10-37 °C, pH 6.0-12.0 and in the presence of 0-4 % (w/v) NaCl. Analysis of the 16S rRNA gene sequence and phylogenetic trees showed the closest phylogenetic relatives to strain A249<sup>T</sup>
were Streptomyces shaanxiensis JCM 16925<sup>T</sup>
(98.0 % 16S rRNA gene sequence similarity) and Streptomyces lanatus JCM 4332<sup>T</sup>
(97.9 %). The DNA-DNA hybridization values between the strain A249<sup>T</sup>
and the two reference strains ranged from 41.4 to 49.4 %. The DNA G+C content was 71.7 mol%. The range of average nucleotide identity values was 81.5-86.7 %. Chemical analysis of cellular components indicated that strain A249<sup>T</sup>
contained ll-diaminopimelic acid, xylose and galactose. The predominant menaquinones were MK-9(H6) and MK-9(H8). The polar lipids were diphosphatidylglycerol, phosphatidylinositol mannosides, phosphatidylethanolamine, two unidentified lipids, one unidentified phospholipid, one unidentified aminolipid and one unidentified aminophospholipid. The major fatty acids comprised C16 : 0, iso-C14 : 0, iso-C15 : 0, iso-C16 : 0, anteiso-C15 : 0 and C16 : 1ω7c. On the basis of the phenotypic and genotypic differentiation of the three tested strains, isolate A249<sup>T</sup>
is proposed to represent a novel species of the genus Streptomyces, named Streptomyces populi sp. nov. The type strain is A249<sup>T</sup>
(=CGMCC 4.7417<sup>T</sup>
=JCM 32175<sup>T</sup>
).</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Zhikuan</ForeName>
<Initials>Z</Initials>
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</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Jiang</LastName>
<ForeName>Binjin</ForeName>
<Initials>B</Initials>
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</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Xiaoguang</ForeName>
<Initials>X</Initials>
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</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Gan</LastName>
<ForeName>Longzhan</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>1Key Laboratory of Leather Chemistry and Engineering, Ministry of Education and College of Light Industry, Textile & Food Engineering, Sichuan University, Chengdu 610065, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Long</LastName>
<ForeName>Xiufeng</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>1Key Laboratory of Leather Chemistry and Engineering, Ministry of Education and College of Light Industry, Textile & Food Engineering, Sichuan University, Chengdu 610065, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Yuqin</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>2Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Tian</LastName>
<ForeName>Yongqiang</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>1Key Laboratory of Leather Chemistry and Engineering, Ministry of Education and College of Light Industry, Textile & Food Engineering, Sichuan University, Chengdu 610065, PR China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2018</Year>
<Month>06</Month>
<Day>26</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>11032-49-8</RegistryNumber>
<NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>523-39-7</RegistryNumber>
<NameOfSubstance UI="C073355">menaquinone 9</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>583-93-7</RegistryNumber>
<NameOfSubstance UI="D003960">Diaminopimelic Acid</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003960" MajorTopicYN="N">Diaminopimelic Acid</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013302" MajorTopicYN="N">Streptomyces</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName>
<QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Populus adenopoda Maxim</Keyword>
<Keyword MajorTopicYN="N">Streptomyces populi</Keyword>
<Keyword MajorTopicYN="N">endophytic</Keyword>
<Keyword MajorTopicYN="N">novel species</Keyword>
<Keyword MajorTopicYN="N">polyphasic taxonomy</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2018</Year>
<Month>6</Month>
<Day>27</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2018</Year>
<Month>8</Month>
<Day>9</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2018</Year>
<Month>6</Month>
<Day>27</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">29944112</ArticleId>
<ArticleId IdType="doi">10.1099/ijsem.0.002877</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
<settlement><li>Pékin</li>
</settlement>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Wang, Zhikuan" sort="Wang, Zhikuan" uniqKey="Wang Z" first="Zhikuan" last="Wang">Zhikuan Wang</name>
</noRegion>
<name sortKey="Gan, Longzhan" sort="Gan, Longzhan" uniqKey="Gan L" first="Longzhan" last="Gan">Longzhan Gan</name>
<name sortKey="Jiang, Binjin" sort="Jiang, Binjin" uniqKey="Jiang B" first="Binjin" last="Jiang">Binjin Jiang</name>
<name sortKey="Li, Xiaoguang" sort="Li, Xiaoguang" uniqKey="Li X" first="Xiaoguang" last="Li">Xiaoguang Li</name>
<name sortKey="Long, Xiufeng" sort="Long, Xiufeng" uniqKey="Long X" first="Xiufeng" last="Long">Xiufeng Long</name>
<name sortKey="Tian, Yongqiang" sort="Tian, Yongqiang" uniqKey="Tian Y" first="Yongqiang" last="Tian">Yongqiang Tian</name>
<name sortKey="Zhang, Yuqin" sort="Zhang, Yuqin" uniqKey="Zhang Y" first="Yuqin" last="Zhang">Yuqin Zhang</name>
</country>
</tree>
</affiliations>
</record>
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