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Streptomyces populi sp. nov., a novel endophytic actinobacterium isolated from stem of Populus adenopoda Maxim.

Identifieur interne : 000C72 ( Main/Exploration ); précédent : 000C71; suivant : 000C73

Streptomyces populi sp. nov., a novel endophytic actinobacterium isolated from stem of Populus adenopoda Maxim.

Auteurs : Zhikuan Wang [République populaire de Chine] ; Binjin Jiang [République populaire de Chine] ; Xiaoguang Li [République populaire de Chine] ; Longzhan Gan [République populaire de Chine] ; Xiufeng Long [République populaire de Chine] ; Yuqin Zhang [République populaire de Chine] ; Yongqiang Tian [République populaire de Chine]

Source :

RBID : pubmed:29944112

Descripteurs français

English descriptors

Abstract

A novel endophytic actinobacterium strain, designated A249T, was isolated from the stem of Populus adenopoda collected at Mount Qingcheng in south-west China. Its taxonomic position was determined by using a polyphasic approach. The cultural and morphological characteristics of isolate A249T were consistent with members of the genus Streptomyces. Growth occurred at 10-37 °C, pH 6.0-12.0 and in the presence of 0-4 % (w/v) NaCl. Analysis of the 16S rRNA gene sequence and phylogenetic trees showed the closest phylogenetic relatives to strain A249T were Streptomyces shaanxiensis JCM 16925T (98.0 % 16S rRNA gene sequence similarity) and Streptomyces lanatus JCM 4332T (97.9 %). The DNA-DNA hybridization values between the strain A249T and the two reference strains ranged from 41.4 to 49.4 %. The DNA G+C content was 71.7 mol%. The range of average nucleotide identity values was 81.5-86.7 %. Chemical analysis of cellular components indicated that strain A249T contained ll-diaminopimelic acid, xylose and galactose. The predominant menaquinones were MK-9(H6) and MK-9(H8). The polar lipids were diphosphatidylglycerol, phosphatidylinositol mannosides, phosphatidylethanolamine, two unidentified lipids, one unidentified phospholipid, one unidentified aminolipid and one unidentified aminophospholipid. The major fatty acids comprised C16 : 0, iso-C14 : 0, iso-C15 : 0, iso-C16 : 0, anteiso-C15 : 0 and C16 : 1ω7c. On the basis of the phenotypic and genotypic differentiation of the three tested strains, isolate A249T is proposed to represent a novel species of the genus Streptomyces, named Streptomyces populi sp. nov. The type strain is A249T (=CGMCC 4.7417T=JCM 32175T).

DOI: 10.1099/ijsem.0.002877
PubMed: 29944112


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<term>DNA, Bacterial (genetics)</term>
<term>Diaminopimelic Acid (chemistry)</term>
<term>Fatty Acids (chemistry)</term>
<term>Nucleic Acid Hybridization (MeSH)</term>
<term>Phospholipids (chemistry)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Stems (microbiology)</term>
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<term>Vitamin K 2 (chemistry)</term>
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<term>Acide diamino-pimélique (composition chimique)</term>
<term>Acides gras (composition chimique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Phospholipides (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Streptomyces (classification)</term>
<term>Streptomyces (croissance et développement)</term>
<term>Streptomyces (isolement et purification)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Tiges de plante (microbiologie)</term>
<term>Vitamine K2 (analogues et dérivés)</term>
<term>Vitamine K2 (composition chimique)</term>
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<term>Vitamin K 2</term>
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<term>Diaminopimelic Acid</term>
<term>Fatty Acids</term>
<term>Phospholipids</term>
<term>Vitamin K 2</term>
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<term>Acide diamino-pimélique</term>
<term>Acides gras</term>
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<term>Streptomyces</term>
<term>Vitamine K2</term>
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<term>Streptomyces</term>
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<term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
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<term>Composition en bases nucléiques</term>
<term>Hybridation d'acides nucléiques</term>
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<front>
<div type="abstract" xml:lang="en">A novel endophytic actinobacterium strain, designated A249
<sup>T</sup>
, was isolated from the stem of Populus adenopoda collected at Mount Qingcheng in south-west China. Its taxonomic position was determined by using a polyphasic approach. The cultural and morphological characteristics of isolate A249
<sup>T</sup>
were consistent with members of the genus Streptomyces. Growth occurred at 10-37 °C, pH 6.0-12.0 and in the presence of 0-4 % (w/v) NaCl. Analysis of the 16S rRNA gene sequence and phylogenetic trees showed the closest phylogenetic relatives to strain A249
<sup>T</sup>
were Streptomyces shaanxiensis JCM 16925
<sup>T</sup>
(98.0 % 16S rRNA gene sequence similarity) and Streptomyces lanatus JCM 4332
<sup>T</sup>
(97.9 %). The DNA-DNA hybridization values between the strain A249
<sup>T</sup>
and the two reference strains ranged from 41.4 to 49.4 %. The DNA G+C content was 71.7 mol%. The range of average nucleotide identity values was 81.5-86.7 %. Chemical analysis of cellular components indicated that strain A249
<sup>T</sup>
contained ll-diaminopimelic acid, xylose and galactose. The predominant menaquinones were MK-9(H6) and MK-9(H8). The polar lipids were diphosphatidylglycerol, phosphatidylinositol mannosides, phosphatidylethanolamine, two unidentified lipids, one unidentified phospholipid, one unidentified aminolipid and one unidentified aminophospholipid. The major fatty acids comprised C16 : 0, iso-C14 : 0, iso-C15 : 0, iso-C16 : 0, anteiso-C15 : 0 and C16 : 1ω7c. On the basis of the phenotypic and genotypic differentiation of the three tested strains, isolate A249
<sup>T</sup>
is proposed to represent a novel species of the genus Streptomyces, named Streptomyces populi sp. nov. The type strain is A249
<sup>T</sup>
(=CGMCC 4.7417
<sup>T</sup>
=JCM 32175
<sup>T</sup>
).</div>
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<AbstractText>A novel endophytic actinobacterium strain, designated A249
<sup>T</sup>
, was isolated from the stem of Populus adenopoda collected at Mount Qingcheng in south-west China. Its taxonomic position was determined by using a polyphasic approach. The cultural and morphological characteristics of isolate A249
<sup>T</sup>
were consistent with members of the genus Streptomyces. Growth occurred at 10-37 °C, pH 6.0-12.0 and in the presence of 0-4 % (w/v) NaCl. Analysis of the 16S rRNA gene sequence and phylogenetic trees showed the closest phylogenetic relatives to strain A249
<sup>T</sup>
were Streptomyces shaanxiensis JCM 16925
<sup>T</sup>
(98.0 % 16S rRNA gene sequence similarity) and Streptomyces lanatus JCM 4332
<sup>T</sup>
(97.9 %). The DNA-DNA hybridization values between the strain A249
<sup>T</sup>
and the two reference strains ranged from 41.4 to 49.4 %. The DNA G+C content was 71.7 mol%. The range of average nucleotide identity values was 81.5-86.7 %. Chemical analysis of cellular components indicated that strain A249
<sup>T</sup>
contained ll-diaminopimelic acid, xylose and galactose. The predominant menaquinones were MK-9(H6) and MK-9(H8). The polar lipids were diphosphatidylglycerol, phosphatidylinositol mannosides, phosphatidylethanolamine, two unidentified lipids, one unidentified phospholipid, one unidentified aminolipid and one unidentified aminophospholipid. The major fatty acids comprised C16 : 0, iso-C14 : 0, iso-C15 : 0, iso-C16 : 0, anteiso-C15 : 0 and C16 : 1ω7c. On the basis of the phenotypic and genotypic differentiation of the three tested strains, isolate A249
<sup>T</sup>
is proposed to represent a novel species of the genus Streptomyces, named Streptomyces populi sp. nov. The type strain is A249
<sup>T</sup>
(=CGMCC 4.7417
<sup>T</sup>
=JCM 32175
<sup>T</sup>
).</AbstractText>
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<Affiliation>2​Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, PR China.</Affiliation>
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</Author>
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<LastName>Tian</LastName>
<ForeName>Yongqiang</ForeName>
<Initials>Y</Initials>
<AffiliationInfo>
<Affiliation>1​Key Laboratory of Leather Chemistry and Engineering, Ministry of Education and College of Light Industry, Textile & Food Engineering, Sichuan University, Chengdu 610065, PR China.</Affiliation>
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<PublicationType UI="D016428">Journal Article</PublicationType>
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<ArticleDate DateType="Electronic">
<Year>2018</Year>
<Month>06</Month>
<Day>26</Day>
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</Article>
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<Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
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<Chemical>
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<NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance>
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<Chemical>
<RegistryNumber>523-39-7</RegistryNumber>
<NameOfSubstance UI="C073355">menaquinone 9</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>583-93-7</RegistryNumber>
<NameOfSubstance UI="D003960">Diaminopimelic Acid</NameOfSubstance>
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<DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
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<MeshHeading>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D013302" MajorTopicYN="N">Streptomyces</DescriptorName>
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<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
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<MeshHeading>
<DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName>
<QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Populus adenopoda Maxim</Keyword>
<Keyword MajorTopicYN="N">Streptomyces populi</Keyword>
<Keyword MajorTopicYN="N">endophytic</Keyword>
<Keyword MajorTopicYN="N">novel species</Keyword>
<Keyword MajorTopicYN="N">polyphasic taxonomy</Keyword>
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<ArticleId IdType="doi">10.1099/ijsem.0.002877</ArticleId>
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<affiliations>
<list>
<country>
<li>République populaire de Chine</li>
</country>
<settlement>
<li>Pékin</li>
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<country name="République populaire de Chine">
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<name sortKey="Wang, Zhikuan" sort="Wang, Zhikuan" uniqKey="Wang Z" first="Zhikuan" last="Wang">Zhikuan Wang</name>
</noRegion>
<name sortKey="Gan, Longzhan" sort="Gan, Longzhan" uniqKey="Gan L" first="Longzhan" last="Gan">Longzhan Gan</name>
<name sortKey="Jiang, Binjin" sort="Jiang, Binjin" uniqKey="Jiang B" first="Binjin" last="Jiang">Binjin Jiang</name>
<name sortKey="Li, Xiaoguang" sort="Li, Xiaoguang" uniqKey="Li X" first="Xiaoguang" last="Li">Xiaoguang Li</name>
<name sortKey="Long, Xiufeng" sort="Long, Xiufeng" uniqKey="Long X" first="Xiufeng" last="Long">Xiufeng Long</name>
<name sortKey="Tian, Yongqiang" sort="Tian, Yongqiang" uniqKey="Tian Y" first="Yongqiang" last="Tian">Yongqiang Tian</name>
<name sortKey="Zhang, Yuqin" sort="Zhang, Yuqin" uniqKey="Zhang Y" first="Yuqin" last="Zhang">Yuqin Zhang</name>
</country>
</tree>
</affiliations>
</record>

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